Sandor Pongor- Selected Publications#

• Kuzniar, A., van Ham, R.C.H.J., Pongor, S., Leunissen, J.A.M. 2008. The Quest for Orthologs: Finding Gene Correspondences across Genomes, Trends Genet, In press
• Sonego, P., Kocsor, A., Pongor, S. 2008. Receiver Operating Characteristics (ROC) Analysis: Applications to the classification of biological sequences and 3D structures. Briefings in Bioinformatics, 9, 198-209
• Ángyán, A., Perczel, A., Pongor, S., Gáspári, Z. 2008. Fast protein fold estimation from NMR-derived distance restraints. Bioinformatics 24, 272-275
• Kocsor, A., Busa-Fekete, R., Pongor S. 2008. Protein Classification Based on Propagation on Unrooted Binary Trees. Peptide and Protein Lett. 15, 428-434
• De Biasio, A., Guarnaccia, C., Popovic, M., Uversky, V.N., Pintar, A., Pongor, S. 2008. Prevalence of Intrinsic Disorder in the Intracellular Region of Human Single-Pass Type I Proteins: The Case of the Notch Ligand Delta-4. J Proteome Res. 7, 2496-2506
• Popovic, M., De Biasio, A., Pintar, A., Pongor, S. 2007. The intracellular region of the Notch ligand Jagged-1 gains partial structure upon binding to synthetic membranes. FEBS J 274, 5325-5336
• Sonego, P., Pacurar, M., Dhir, S., Kertész-Farkas, A, Kocsor, A., Gáspári, Z., Jack A.M. Leunissen, J.A.M., Pongor, S. 2007. A Protein Classification Benchmark collection for machine learning. Nucl. Acids. Res. 35, D232-236
• Kaján, L., Kertész-Farkas, A., Coinete Franklin, D.R., Kocsor, A., Pongor, S. 2006. Application of a simple log likelihood ratio approximant to protein sequence classification. Bioinformatics 22, 2865-2869
• Popovic, M., Coglievina, M., Guarnaccia, C., Verdone, G., Esposito, G., Pintar, A., Pongor, S. 2006. Gene synthesis, expression, purification, and characterisation of human Jagged-1 intracellular region. Protein Expr. Purif. 47, 398-404
• Ágoston, V., Cemazar, M., Kaján, L., Pongor, S. 2005. Graph representation of oxidative folding pathways. BMC Bioinformatics 6, 19
• Ágoston, V., Csermely, P., Pongor, S. 2005. Weak hits confuse complex systems. Physical Review E, Stat Nonlin Soft Matter Phys. 71, 051909
• Moss, D.S., Jelaska, S., Pongor, S., editors. Essays in Bioinformatics. IOS Press, Amsterdam 11-31
• Csermely, P., Ágoston, V., Pongor, S. 2005. The efficiency of multi-target drugs: The network approach may help drug design. Trends Pharmacol. Sci. 26, 178-182
• Gáspári, L., Vlahovicek, K., Pongor, S. 2005. Efficient recognition of protein folds in protein 3-D structures by the improved PRIDE algorithm. Bioinformatics 21, 3322-3323
• Kocsor, A., Kertész-Farkas, A., Kaján, L., Pongor, S. 2005. Application of compression-based distance measures to protein sequence classification: a methodological study. Bioinformatics, 22, 407-412
• Moss, D.S., Jelaska, S., Pongor, S., editors. 2005. Essays in Bioinformatics. IOS Press, Amsterdam, 251 pages.
• Pintar, A., Pongor, S. 2005. The “first in-last out” hypothesis on protein folding revisited. Proteins 60, 584-590
• Zahariev, S., Guarnaccia, C., Zanuttin, F., Pintar, A., Esposito, G., Maravic, G., Krust, B., Hovanessian, A.G., Pongor, S. 2005. Synthesis and comparative studies of the arginine and Nw,Nw-dimethylarginine forms of the human nucleolin glycine/arginine rich domain. J. Pept. Sci. 11, 17-28
• Cemazar, M., Zahariev, S., Pongor, S., Hore, P.J. 2004. Oxidative folding process: from disulfide species to conformations of amino acid residues in Amarathus a-amylase inhibitor. J. Biol. Chem. 279, 16697-16705
• Guarnaccia C., Pintar A., Pongor S. 2004. Exon 6 of human Jagged-1 encodes an autonomously folding unit. FEBS Lett. 574(1-3):156-160
• Guarnaccia C., Raman B., Zahariev S., Simoncsits A., Pongor S. 2004. DNA-mediated assembly of weakly interacting DNA-binding protein subunits: in vitro recruitment of phage 434 repressor and yeast GCN4 DNA-binding domains. Nucl. Acids Res. 32, 4992-5002
• Zahariev S., Guarnaccia C., Lamba D., Cemazar M., Pongor S. 2004. Solvent-free synthesis of azole carboximidamides and one pot preparation of guanidines from amines. J. Pept. Sci. 10, (S2):151
• Cemazar, M., Zakhariev, S., Lopez, J.J., Carugo, O., Jones, J.A., Hore, P.J., Pongor, S. 2002. Oxidative folding intermediates with non-native disulfide bridges between adjacent cystein residues. Proc. Natl. Acad. Sci. USA. 100, 5754-5759