Canan Atilgan - Selected Publications#
[1] E. Cetin, AR Atilgan, C. Atilgan, “DHFR mutants modulate their synchronized dynamics with the substrate by shifting hydrogen bond occupancies,” Journal of Chemical Information and Modeling, 62, 6715-6726 (2022).
[2] M.S. Manna, Y.T. Tamer, I. Gaszek, N. Poulides, A. Ahmed, X. Wang, F.C.R. Toprak, D. Woodard, A.Y. Koh, N.S. Williams, D. Borek, A.R. Atilgan, J. Hulleman, C. Atilgan, U. Tambar, E. Toprak, “Mutant–specific drug impedes the evolution of antibiotic resistance in Escherichia coli,” Nature Communications, 12, 2949 (2021).
[3] T.F. Guclu, A.R. Atilgan, C. Atilgan, “Dynamic Community Composition Unravels Allosteric Communication in PDZ3,” Journal of Physical Chemistry B, 125, 2266-2276 (2021).
[4] Jalalypour, O. Sensoy, C. Atilgan, “Perturb-Scan-Pull: A Novel Method Facilitating Conformational Transitions in Proteins,” Journal of Chemical Theory and Computation, 16, 3825 (2020).
[5] Y.T. Tamer, I.K. Gaszek, H. Abdizadeh, T. Altunbasak Batur, K. Reynolds, A.R. Atilgan, C. Atilgan, E. Toprak, “High-order epistasis in catalytic power of dihydrofolate reductase gives rise to a rugged fitness landscape in the presence of trimethoprim selection,” Molecular Biology and Evolution, 36, 1533-1550 (2019).
[6] O. Sensoy, A.R. Atilgan, C. Atilgan, “FbpA Iron Storage and Release are Governed by Periplasmic Microenvironments,” Phys. Chem. Chem. Phys, 19, 6064-6075 (2017).
[7] C. Atilgan, O.B. Okan, A.R. Atilgan, "Network-based Models as Tools Hinting at Non-evident Protein Functionality," Annual Review of Biophysics, 41, 205-225 (2012).
[8] C. Atilgan, A. R. Atilgan, "Perturbation-Response Scanning: Ligand Entry-Exit Mechanisms of Ferric Binding Protein," PLoS Comput. Biol., 5, e1000544 (2009).
[9] A. R. Atilgan, D. Turgut, C. Atilgan, "Screened Non-bonded Interactions in Native Proteins Manipulate Optimal Paths for Robust Residue Communication," Biophys. J., 92, 3052-3062 (2007).
[10] A. R. Atilgan, P. Akan, C. Baysal, "Small-World Communication of Residues and Significance for Protein Dynamics," Biophys. J., 86, 85-91 (2004).
