!Partial List of Publications
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*citations-to-date from google scholar\\
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Hausser J, Syed AP, Selevsek N, van Nimwegen E, Jaskiewicz L, Aebersold R, Zavolan M. Timescales\\
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and bottlenecks in miRNA-dependent gene regulation. Mol Syst Biol. 9:711 (2013).\\
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Khorshid M, Hausser J, van Nimwegen E, Zavolan M. A biophysical miRNA-mRNA interaction\\
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model infers canonical and non-canonical targets. Nat. Methods Jan 20 (2013).\\
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(14*)\\
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Martin G, Gruber AR, Keller W, Zavolan M. Genome-wide analysis of pre-mRNA 3’ end processing\\
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reveals a decisive role of human cleavage factor I in the regulation of 3’ UTR length. Cell Rep.\\
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1:753-763 (2012).\\
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(35*)\\
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Kishore S, Jaskiewicz L, Burger L, Hausser J, Khorshid M, Zavolan M. A quantitative analysis of\\
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CLIP methods for identifying binding sites of RNA-binding proteins. Nat. Methods 8:559-564 (2011).\\
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(108*)\\
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Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M Jr,\\
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Jungkamp AC, Munschauer M, Ulrich A, Wardle GS, Dewell S, Zavolan M, Tuschl T. Transcriptomewide\\
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identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell 141:129-141\\
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(2010).\\
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(662*)\\
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Hausser J, Landthaler M, Jaskiewicz L, Gaidatzis D, Zavolan M. Relative contribution of sequence and\\
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structure features to the mRNA binding of Argonaute/EIF2C-miRNA complexes and the degradation\\
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of miRNA targets. Genome Res. 19:2009-2020 (2009).\\
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(57*)\\
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Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO,\\
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Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foà R, Schliwka J, Fuchs U,\\
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Novosel A, Müller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De\\
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Vita G, Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di Lauro R,\\
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Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN, Benzing T, Lichter P, Tam W,\\
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Brownstein MJ, Bosio A, Borkhardt A, Russo JJ, Sander C, Zavolan M, Tuschl T. A mammalian\\
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microRNA expression atlas based on small RNA library sequencing. Cell 129:1401-1414 (2007).\\
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(1831*)\\
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Gaidatzis D, van Nimwegen E, Hausser J, Zavolan M. Inference of miRNA targets using evolutionary\\
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conservation and pathway analysis. BMC Bioinformatics 8:69 (2007).\\
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(195*)\\
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Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grässer FA, van Dyk LF, Chien M,\\
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Russo JJ, Ju J, Randall G, Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T.\\
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Identification of the microRNAs of the herpesvirus family. Nat. Methods 2:269-276 (2005).\\
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(848*)